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  5. Solyc03g062650.3.1

Solyc03g062650.3.1 (Solyc03g062650)


Aliases : Solyc03g062650

Description : component TRM732 of TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex


Gene families : OG0006426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g062650.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00258470 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
AT3G55160 No alias unknown protein; EXPRESSED IN: 11 plant structures;... 0.14 OrthoFinder output from all 47 species
Cba_g74571 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.02 OrthoFinder output from all 47 species
Ceric.12G034300.1 Ceric.12G034300 component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.05 OrthoFinder output from all 47 species
Cre15.g642050 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g13115 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Ehy_g12389 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01011388001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
Gb_02094 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Gb_02097 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
LOC_Os08g07290.1 LOC_Os08g07290 component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.05 OrthoFinder output from all 47 species
Mp2g24690.1 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Ore_g33228 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.06 OrthoFinder output from all 47 species
Sam_g18072 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Smo74297 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Zm00001e040139_P001 Zm00001e040139 component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR019442 THADA/TRM732_DUF2428 1021 1345
No external refs found!