Solyc03g058190.3.1 (Solyc03g058190)

Aliases : Solyc03g058190

Description : Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana (sp|f4k410|svr3_arath : 1115.0)

Gene families : OG0002241 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002241_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g058190.3.1
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00103p00148260	evm_27.TU.AmTr_v1...	Putative elongation factor TypA-like SVR3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Adi_g006702	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g28778	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g09823	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g23569	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aob_g12812	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g13308	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0112.g045786	No alias	not classified & original description: CDS=152-2350	0.03	OrthoFinder output from all 47 species
Cba_g21532	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.34G006900.1	Ceric.34G006900	not classified & original description: pacid=50624161...	0.03	OrthoFinder output from all 47 species
Cre07.g335200	No alias	Putative elongation factor TypA-like SVR3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Dac_g14982	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02920	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dde_g10273	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g02805	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Gb_15061	No alias	Putative elongation factor TypA-like SVR3, chloroplastic...	0.03	OrthoFinder output from all 47 species
LOC_Os02g18450.1	LOC_Os02g18450	Putative elongation factor TypA-like SVR3, chloroplastic...	0.07	OrthoFinder output from all 47 species
Lfl_g02041	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
MA_138810g0010	No alias	Putative elongation factor TypA-like SVR3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Msp_g25907	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g28212	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g19686	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g03149	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14425	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g19777	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo145812	No alias	Putative elongation factor TypA-like SVR3, chloroplastic...	0.08	OrthoFinder output from all 47 species
Spa_g07228	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g02062	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e014138_P001	Zm00001e014138	Putative elongation factor TypA-like SVR3, chloroplastic...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004827	proline-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000640	EFG_V-like	471	556
IPR000795	T_Tr_GTP-bd_dom	79	270
IPR004161	EFTu-like_2	294	363

External Links

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Solyc03g058190.3.1 (Solyc03g058190)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation