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  5. Solyc03g020020.3.1

Solyc03g020020.3.1 (EMB2016, Solyc03g020020)


Aliases : EMB2016, Solyc03g020020

Description : regulatory component VIR of adenosine N6-methyltransferase complex


Gene families : OG0007626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g020020.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00079350 EMB2016,... RNA processing.RNA modification.mRNA... 0.07 OrthoFinder output from all 47 species
AT3G05680 EMB2016 embryo defective 2016 0.12 OrthoFinder output from all 47 species
Adi_g117188 EMB2016 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Aev_g20810 EMB2016 regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species
Ala_g07640 EMB2016 regulatory component *(VIR) of adenosine... 0.07 OrthoFinder output from all 47 species
Als_g16425 EMB2016 regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species
Aob_g21900 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Aop_g09034 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Aspi01Gene70941.t1 EMB2016, Aspi01Gene70941 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70942.t1 EMB2016, Aspi01Gene70942 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g023923 EMB2016 not classified & original description: CDS=163-1173 0.03 OrthoFinder output from all 47 species
Cba_g12918 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Ceric.09G038400.1 EMB2016, Ceric.09G038400 regulatory component *(VIR) of adenosine... 0.08 OrthoFinder output from all 47 species
Dcu_g34300 EMB2016 regulatory component *(VIR) of adenosine... 0.09 OrthoFinder output from all 47 species
Dde_g39555 EMB2016 regulatory component *(VIR) of adenosine... 0.02 OrthoFinder output from all 47 species
GSVIVT01020162001 EMB2016 RNA processing.RNA modification.mRNA... 0.15 OrthoFinder output from all 47 species
Gb_24781 EMB2016 regulatory component VIR of adenosine... 0.04 OrthoFinder output from all 47 species
LOC_Os03g35340.1 EMB2016, LOC_Os03g35340 regulatory component VIR of adenosine... 0.06 OrthoFinder output from all 47 species
Lfl_g12938 EMB2016 regulatory component *(VIR) of adenosine... 0.11 OrthoFinder output from all 47 species
MA_10427076g0010 EMB2016 no description available(sp|f4j8g7|vir_arath : 177.0) 0.04 OrthoFinder output from all 47 species
MA_5836g0010 EMB2016 regulatory component VIR of adenosine... 0.03 OrthoFinder output from all 47 species
Mp1g10290.1 EMB2016 regulatory component VIR of adenosine... 0.07 OrthoFinder output from all 47 species
Msp_g13667 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Nbi_g41774 EMB2016 regulatory component *(VIR) of adenosine... 0.08 OrthoFinder output from all 47 species
Ore_g19695 EMB2016 regulatory component *(VIR) of adenosine... 0.07 OrthoFinder output from all 47 species
Pir_g16072 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Ppi_g08793 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010851 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Sam_g18026 No alias regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Spa_g21962 EMB2016 regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species
Zm00001e012524_P001 EMB2016, Zm00001e012524 regulatory component VIR of adenosine... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR031801 VIR_N 9 124
No external refs found!