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  5. Solyc02g089520.2.1

Solyc02g089520.2.1 (COL2, ATCOL2, Solyc02g089520)


Aliases : COL2, ATCOL2, Solyc02g089520

Description : transcription factor (BBX-CO)


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g089520.2.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cba_g10222 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05588 COL2, ATCOL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_27657 COL2, ATCOL2 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g08150.1 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
LOC_Os04g42020.1 ATCOL5, COL5,... transcription factor (BBX-CO) 0.01 OrthoFinder output from all 47 species
LOC_Os10g41100.1 ATCOL5, COL5,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Ore_g09426 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10567 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005340 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: CDS=210-1442 0.02 OrthoFinder output from all 47 species
Spa_g44555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 340 382
IPR000315 Znf_B-box 60 106
No external refs found!