Solyc02g079000.4.1 (FTSH12, EMB36,...)

Aliases : FTSH12, EMB36, EMB156, EMB1047, Solyc02g079000

Description : component FtsH12 of protein translocation ATPase motor complex

Gene families : OG0008369 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008369_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g079000.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00195710	FTSH12, EMB36,...	Protein degradation.peptidase families.metallopeptidase...	0.06	OrthoFinder output from all 47 species
Adi_g020303	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.07	OrthoFinder output from all 47 species
Azfi_s0059.g034668	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.03	OrthoFinder output from all 47 species
Ceric.1Z112600.1	FTSH12, EMB36,...	not classified & original description: pacid=50567678...	0.04	OrthoFinder output from all 47 species
Dde_g04915	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.02	OrthoFinder output from all 47 species
Ehy_g06157	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.04	OrthoFinder output from all 47 species
Ehy_g15728	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.03	OrthoFinder output from all 47 species
GSVIVT01036763001	FTSH12, EMB36,...	Protein degradation.peptidase families.metallopeptidase...	0.15	OrthoFinder output from all 47 species
Gb_37729	FTSH12, EMB36,...	ATP-dependent zinc metalloprotease FTSH 12,...	0.04	OrthoFinder output from all 47 species
Len_g15368	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.02	OrthoFinder output from all 47 species
Lfl_g04997	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.06	OrthoFinder output from all 47 species
MA_10426764g0010	FTSH12, EMB36,...	ATP-dependent zinc metalloprotease FTSH 12,...	0.04	OrthoFinder output from all 47 species
Mp3g06130.1	FTSH12, EMB36,...	component FtsH12 of protein translocation ATPase motor complex	0.11	OrthoFinder output from all 47 species
Ore_g17622	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.04	OrthoFinder output from all 47 species
Sam_g16344	No alias	component *(FtsH12) of protein translocation ATPase...	0.04	OrthoFinder output from all 47 species
Smo81522	FTSH12, EMB36,...	Protein degradation.peptidase families.metallopeptidase...	0.07	OrthoFinder output from all 47 species
Spa_g15771	FTSH12, EMB36,...	component *(FtsH12) of protein translocation ATPase...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0003937	IMP cyclohydrolase activity	IEP	HCCA
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006788	heme oxidation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0019238	cyclohydrolase activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	677	720
IPR003959	ATPase_AAA_core	518	654
IPR000642	Peptidase_M41	747	948

External Links

No external refs found!

Solyc02g079000.4.1 (FTSH12, EMB36,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation