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  5. Solyc02g070230.2.1

Solyc02g070230.2.1 (Solyc02g070230)


Aliases : Solyc02g070230

Description : Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana (sp|b5x582|twih_arath : 88.2)


Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g070230.2.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
Adi_g109465 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08419 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09763 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23758 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17378 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037928001 No alias Twinkle homolog protein, chloroplastic/mitochondrial... 0.04 OrthoFinder output from all 47 species
Gb_13380 No alias DNA primase and helicase (TWINKLE) 0.06 OrthoFinder output from all 47 species
Smo164801 No alias Cell cycle.organelle machineries.DNA replication.DNA... 0.04 OrthoFinder output from all 47 species
Spa_g51689 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!