Solyc02g064710.3.1 (Solyc02g064710)

Aliases : Solyc02g064710

Description : component ADA1 of SAGA transcription co-activator complex

Gene families : OG0001506 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001506_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g064710.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G14850	No alias	unknown protein; BEST Arabidopsis thaliana protein match...	0.03	OrthoFinder output from all 47 species
Adi_g064784	No alias	component *(ADA1) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Dcu_g05456	No alias	component *(ADA1) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Ehy_g18080	No alias	component *(ADA1) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
LOC_Os03g55450.1	LOC_Os03g55450	component ADA1 of SAGA transcription co-activator complex	0.04	OrthoFinder output from all 47 species
LOC_Os04g21650.2	LOC_Os04g21650	component ADA1 of SAGA transcription co-activator complex	0.03	OrthoFinder output from all 47 species
Nbi_g02344	No alias	component *(ADA1) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Zm00001e005767_P001	Zm00001e005767	component ADA1 of SAGA transcription co-activator complex	0.03	OrthoFinder output from all 47 species
Zm00001e011984_P001	Zm00001e011984	component ADA1 of SAGA transcription co-activator complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0031248	protein acetyltransferase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0070461	SAGA-type complex	IEA	Interproscan
CC	GO:0140535	intracellular protein-containing complex	None	Extended
CC	GO:1902493	acetyltransferase complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024738	Hfi1/Tada1	7	255

External Links

No external refs found!