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  5. Solyc02g063490.3.1

Solyc02g063490.3.1 (PMDH1, Solyc02g063490)


Aliases : PMDH1, Solyc02g063490

Description : peroxisomal NAD-dependent malate dehydrogenase


Gene families : OG0000664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g063490.3.1

Target Alias Description ECC score Gene Family Method Actions
AT2G22780 PMDH1 peroxisomal NAD-malate dehydrogenase 1 0.04 OrthoFinder output from all 47 species
AT3G15020 mMDH2 Lactate/malate dehydrogenase family protein 0.03 OrthoFinder output from all 47 species
Adi_g021248 MDH malate dehydrogenase component of AAA-ATPase motor... 0.02 OrthoFinder output from all 47 species
Adi_g048705 MDH malate dehydrogenase component of AAA-ATPase motor... 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001052 PMDH1 not classified & original description: CDS=274-1245 0.05 OrthoFinder output from all 47 species
Cba_g15037 mMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Cba_g38700 MDH malate dehydrogenase component of AAA-ATPase motor... 0.03 OrthoFinder output from all 47 species
Cre03.g194850 MDH Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre10.g423250 PMDH1 Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
Dde_g11454 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Gb_04596 MDH malate dehydrogenase component of AAA-ATPase motor complex 0.03 OrthoFinder output from all 47 species
LOC_Os07g43700.2 MDH, LOC_Os07g43700 malate dehydrogenase component of AAA-ATPase motor complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g43630.1 PMDH1, LOC_Os12g43630 peroxisomal NAD-dependent malate dehydrogenase 0.04 OrthoFinder output from all 47 species
MA_10431009g0010 MDH malate dehydrogenase component of AAA-ATPase motor complex 0.03 OrthoFinder output from all 47 species
MA_15580g0010 mMDH1 mitochondrial NAD-dependent malate dehydrogenase 0.03 OrthoFinder output from all 47 species
Mp5g19470.1 mMDH2 mitochondrial NAD-dependent malate dehydrogenase 0.02 OrthoFinder output from all 47 species
Mp7g08650.1 MDH malate dehydrogenase component of AAA-ATPase motor complex 0.02 OrthoFinder output from all 47 species
Nbi_g02758 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.01 OrthoFinder output from all 47 species
Nbi_g04197 mMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Pir_g35666 mMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Sam_g39516 No alias peroxisomal NAD-dependent malate dehydrogenase &... 0.03 OrthoFinder output from all 47 species
Solyc09g091070.3.1 MDH, Solyc09g091070 malate dehydrogenase component of AAA-ATPase motor complex 0.01 OrthoFinder output from all 47 species
Solyc12g014180.2.1 mMDH2, Solyc12g014180 mitochondrial NAD-dependent malate dehydrogenase 0.02 OrthoFinder output from all 47 species
Tin_g03287 MDH malate dehydrogenase component of AAA-ATPase motor... 0.02 OrthoFinder output from all 47 species
Zm00001e017932_P003 PMDH1, Zm00001e017932 peroxisomal NAD-dependent malate dehydrogenase 0.02 OrthoFinder output from all 47 species
Zm00001e032495_P001 mMDH1, Zm00001e032495 mitochondrial NAD-dependent malate dehydrogenase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022383 Lactate/malate_DH_C 186 349
IPR001236 Lactate/malate_DH_N 42 184
No external refs found!