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  5. Solyc02g014180.2.1

Solyc02g014180.2.1 (Solyc02g014180)


Aliases : Solyc02g014180

Description : no hits & (original description: none)


Gene families : OG0003261 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003261_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g014180.2.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00083380 evm_27.TU.AmTr_v1... No description available 0.11 OrthoFinder output from all 47 species
AT5G23110 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.27 OrthoFinder output from all 47 species
Adi_g104696 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21068 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g27391 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0051.g031263 No alias not classified & original description: CDS=118-9102 0.05 OrthoFinder output from all 47 species
Cba_g14558 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.15G038000.1 Ceric.15G038000 not classified & original description: pacid=50639478... 0.11 OrthoFinder output from all 47 species
Ceric.1Z241400.1 Ceric.1Z241400 not classified & original description: pacid=50604635... 0.05 OrthoFinder output from all 47 species
Cre01.g044850 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g17523 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01012044001 No alias No description available 0.16 OrthoFinder output from all 47 species
Gb_03748 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Lfl_g10443 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10436421g0010 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
MA_29192g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Mp5g01480.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g23995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g38134 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g30742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012473 No alias not classified & original description: CDS=205-14337 0.03 OrthoFinder output from all 47 species
Sam_g13689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo152901 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc02g014170.3.1 Solyc02g014170 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g22652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e006551_P001 Zm00001e006551 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!