Solyc01g106220.4.1 (Solyc01g106220)

Aliases : Solyc01g106220

Description : no hits & (original description: none)

Gene families : OG0004448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004448_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g106220.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00229090	evm_27.TU.AmTr_v1...	No description available	0.07	OrthoFinder output from all 47 species
AT5G64420	No alias	DNA polymerase V family	0.18	OrthoFinder output from all 47 species
Ala_g09041	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14030	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g14346	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36180	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g15556	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.13G063900.1	Ceric.13G063900	not classified & original description: pacid=50636739...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021108.9	No alias	No description available	0.08	OrthoFinder output from all 47 species
Cre01.g012350	No alias	No description available	0.09	OrthoFinder output from all 47 species
Dac_g37686	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07139	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01038520001	No alias	No description available	0.13	OrthoFinder output from all 47 species
LOC_Os02g04270.1	LOC_Os02g04270	no hits & (original description: none)	0.15	OrthoFinder output from all 47 species
Len_g46658	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10433105g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Mp5g07000.1	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Pp3c13_11570V3.1	Pp3c13_11570	DNA polymerase V family	0.02	OrthoFinder output from all 47 species
Sam_g34325	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Smo438609	No alias	No description available	0.03	OrthoFinder output from all 47 species
Spa_g22551	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08178	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e013596_P001	Zm00001e013596	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007015	DNA_pol_V/MYBBP1A	159	972

External Links

No external refs found!

Solyc01g106220.4.1 (Solyc01g106220)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation