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  5. Solyc01g017170.1.1

Solyc01g017170.1.1 (NDHB.1, Solyc01g017170)


Aliases : NDHB.1, Solyc01g017170

Description : NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica (sp|p0cc48|nu2c1_cofar : 150.0)


Gene families : OG0002858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g017170.1.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00105080 evm_27.TU.AmTr_v1... NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.04 OrthoFinder output from all 47 species
AMTR_s00543p00012290 evm_27.TU.AmTr_v1... NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.02 OrthoFinder output from all 47 species
ATCG00890 NDHB.1 NADH-Ubiquinone/plastoquinone (complex I) protein 0.05 OrthoFinder output from all 47 species
ATCG01250 NDHB.2 NADH-Ubiquinone/plastoquinone (complex I) protein 0.05 OrthoFinder output from all 47 species
Aev_g13772 NDHB.1 component *(NdhB) of NDH membrane subcomplex M &... 0.03 OrthoFinder output from all 47 species
Ala_g08110 NDHB.1 component *(NdhB) of NDH membrane subcomplex M &... 0.02 OrthoFinder output from all 47 species
Gb_17281 NDHB.1 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.02 OrthoFinder output from all 47 species
Gb_18608 No alias NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.03 OrthoFinder output from all 47 species
Gb_26291 NDHB.1 component NdhB of NDH membrane subcomplex M 0.03 OrthoFinder output from all 47 species
LOC_Os07g25004.1 NDHB.1, LOC_Os07g25004 component NdhB of NDH membrane subcomplex M 0.03 OrthoFinder output from all 47 species
LOC_Os08g15248.1 NDHB.1, LOC_Os08g15248 component NdhB of NDH membrane subcomplex M 0.03 OrthoFinder output from all 47 species
Lfl_g33043 NDHB.1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33049 NDHB.1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25321 NDHB.1 component *(NdhB) of NDH membrane subcomplex M &... 0.02 OrthoFinder output from all 47 species
Nbi_g25819 NAD2B, NAD2.2, NAD2 component *(ND2/NQO14) of NADH dehydrogenase proton... 0.02 OrthoFinder output from all 47 species
Ore_g01088 NDHB.1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g56892 NDHB.1 component *(NdhB) of NDH membrane subcomplex M &... 0.03 OrthoFinder output from all 47 species
Solyc00g500146.1.1 NDHB.1, Solyc00g500146 NAD(P)H-quinone oxidoreductase subunit 2 B,... 0.03 OrthoFinder output from all 47 species
Solyc01g017260.1.1 NDHB.1, Solyc01g017260 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic... 0.02 OrthoFinder output from all 47 species
Solyc04g039800.3.1 NDHB.1, Solyc04g039800 NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.02 OrthoFinder output from all 47 species
Solyc09g015260.1.1 NDHB.1, Solyc09g015260 NAD(P)H-quinone oxidoreductase subunit 2 A,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001750 ND/Mrp_mem 77 132
No external refs found!