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  5. Smo437541

Smo437541 (MAC3B)


Aliases : MAC3B

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MAC3 component


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo437541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00212570 MAC3A,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Aop_g13324 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39267.t1 MAC3A, Aspi01Gene39267 E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G040200.1 MAC3A, Ceric.06G040200 E3 ubiquitin protein ligase *(PUB60) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.3 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.4 MAC3A Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Cre02.g073650 MAC3B RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Dcu_g02996 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os10g32880.1 MAC3A, LOC_Os10g32880 component MAC3 of non-snRNP MOS4-associated complex 0.1 OrthoFinder output from all 47 species
Msp_g02452 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g15271 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species
Zm00001e004625_P001 MAC3B, Zm00001e004625 component MAC3 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
Zm00001e012723_P001 MAC3B, Zm00001e012723 component MAC3 of non-snRNP MOS4-associated complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 252 288
No external refs found!