- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0001966 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001966_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo406722 | |
| Cluster | HCCA: Cluster_56 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g24385 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g33081 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g15224 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G016800.1 | Ceric.04G016800 | not classified & original description: pacid=50631515... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.39G053400.1 | Ceric.39G053400 | not classified & original description: pacid=50583310... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g11688 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03725 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01025601001 | No alias | protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| MA_10432896g0010 | No alias | protein SLOW GREEN 1, chloroplastic OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g02065 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0172.g024421 | No alias | not classified & original description: CDS=34-1416 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g008160.4.1 | Solyc01g008160 | protein SLOW GREEN 1, chloroplastic OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g051660.3.1 | Solyc04g051660 | protein SLOW GREEN 1, chloroplastic OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc09g005740.3.1 | Solyc09g005740 | protein SLOW GREEN 1, chloroplastic OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008236 | serine-type peptidase activity | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0017171 | serine hydrolase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR019734 | TPR_repeat | 183 | 211 |
| No external refs found! |