Smo269521

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.BOP1 component

Gene families : OG0005027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005027_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo269521
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00239810	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT2G40360	No alias	Transducin/WD40 repeat-like superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g024474	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
Aev_g42428	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
Azfi_s0280.g062281	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.04	OrthoFinder output from all 47 species
Ceric.28G059200.1	Ceric.28G059200	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000382.38	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre10.g417950	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g10502	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.05	OrthoFinder output from all 47 species
Dde_g04427	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.02	OrthoFinder output from all 47 species
GSVIVT01004116001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os07g25440.1	LOC_Os07g25440	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.06	OrthoFinder output from all 47 species
Mp2g26050.1	No alias	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.05	OrthoFinder output from all 47 species
Pp3c18_14790V3.1	Pp3c18_14790	Transducin/WD40 repeat-like superfamily protein	0.02	OrthoFinder output from all 47 species
Ppi_g17370	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.04	OrthoFinder output from all 47 species
Sam_g10421	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)...	0.03	OrthoFinder output from all 47 species
Solyc01g103720.4.1	Solyc01g103720	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.05	OrthoFinder output from all 47 species
Zm00001e017600_P002	Zm00001e017600	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012953	BOP1_N_dom	43	299

External Links

No external refs found!

Smo269521

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation