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Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL4 component
Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo166994 | |
| Cluster | HCCA: Cluster_9 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G09630 | No alias | Ribosomal protein L4/L1 family | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g12528 | No alias | component *(uL4) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.07G041200.1 | Ceric.07G041200 | component *(uL4) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cre09.g397697 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g12036 | No alias | component *(uL4) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_21885 | No alias | component RPL4 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os03g58204.1 | LOC_Os03g58204 | component RPL4 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| MA_9991417g0010 | No alias | component RPL4 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g20310.1 | No alias | component RPL4 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13132 | No alias | component *(uL4) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g25486 | No alias | component *(uL4) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g007250.4.1 | Solyc09g007250 | component RPL4 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g086010.2.1 | Solyc10g086010 | component RPL4 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0004055 | argininosuccinate synthase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002136 | Ribosomal_L4/L1e | 28 | 267 |
| No external refs found! |