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  5. Smo164801

Smo164801


Description : Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE


Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo164801
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Adi_g023450 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g109465 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11567 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007473 No alias DNA primase and helicase *(TWINKLE) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0116.g046397 No alias DNA primase and helicase *(TWINKLE) & original... 0.03 OrthoFinder output from all 47 species
Cba_g14570 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z212100.1 Ceric.1Z212100 not classified & original description: pacid=50582227... 0.01 OrthoFinder output from all 47 species
Ceric.1Z319500.1 Ceric.1Z319500 DNA primase and helicase *(TWINKLE) & original... 0.03 OrthoFinder output from all 47 species
Cre12.g503150 No alias Twinkle homolog protein, chloroplastic/mitochondrial... 0.01 OrthoFinder output from all 47 species
Dac_g23758 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008778001 No alias Cell cycle.organelle machineries.DNA replication.DNA... 0.06 OrthoFinder output from all 47 species
GSVIVT01021728001 No alias Cell cycle.organelle machineries.DNA replication.DNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01037928001 No alias Twinkle homolog protein, chloroplastic/mitochondrial... 0.04 OrthoFinder output from all 47 species
Gb_13380 No alias DNA primase and helicase (TWINKLE) 0.03 OrthoFinder output from all 47 species
Msp_g35190 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g14748 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06708 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57752 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g070230.2.1 Solyc02g070230 Twinkle homolog protein, chloroplastic/mitochondrial... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007694 DNA_helicase_DnaB-like_C 324 572
No external refs found!