LOC_Os12g10580.1 (RBCL, LOC_Os12g10580)

Aliases : RBCL, LOC_Os12g10580

Description : component psRPS15 of small ribosomal subunit proteome

Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g10580.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272640	evm_27.TU.AmTr_v1...	Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba	0.11	OrthoFinder output from all 47 species
AMTR_s00012p00184400	RBCL,...	Ribulose bisphosphate carboxylase large chain...	0.11	OrthoFinder output from all 47 species
AMTR_s00606p00006850	RBCL,...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.11	OrthoFinder output from all 47 species
ATCG00490	RBCL	ribulose-bisphosphate carboxylases	0.37	OrthoFinder output from all 47 species
ATMG00280	ORF110A	Ribulose bisphosphate carboxylase large chain, catalytic domain	0.07	OrthoFinder output from all 47 species
Aev_g01070	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.26	OrthoFinder output from all 47 species
Als_g11735	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.08	OrthoFinder output from all 47 species
Azfi_s0033.g025103	No alias	not classified & original description: CDS=1-594	0.03	OrthoFinder output from all 47 species
Cba_g06423	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.15	OrthoFinder output from all 47 species
Ceric.02G014200.1	RBCL, Ceric.02G014200	large subunit of ribulose-1,5-bisphosphat...	0.14	OrthoFinder output from all 47 species
Ceric.02G046100.1	RBCL, Ceric.02G046100	large subunit of ribulose-1,5-bisphosphat...	0.05	OrthoFinder output from all 47 species
Ceric.11G074700.1	RBCL, Ceric.11G074700	not classified & original description: pacid=50596717...	0.04	OrthoFinder output from all 47 species
Ceric.11G075000.1	RBCL, Ceric.11G075000	not classified & original description: pacid=50595488...	0.11	OrthoFinder output from all 47 species
Ceric.16G059900.1	RBCL, Ceric.16G059900	not classified & original description: pacid=50589806...	0.07	OrthoFinder output from all 47 species
Ceric.1Z018000.1	RBCL, Ceric.1Z018000	not classified & original description: pacid=50586374...	0.05	OrthoFinder output from all 47 species
Ceric.1Z021900.1	RBCL, Ceric.1Z021900	large subunit of ribulose-1,5-bisphosphat...	0.11	OrthoFinder output from all 47 species
Ceric.1Z141800.1	RBCL, Ceric.1Z141800	large subunit of ribulose-1,5-bisphosphat...	0.09	OrthoFinder output from all 47 species
Ceric.1Z162100.1	RBCL, Ceric.1Z162100	large subunit of ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Ceric.29G033400.1	RBCL, Ceric.29G033400	large subunit of ribulose-1,5-bisphosphat...	0.16	OrthoFinder output from all 47 species
Ceric.35G017400.1	RBCL, Ceric.35G017400	not classified & original description: pacid=50581736...	0.11	OrthoFinder output from all 47 species
Ceric.36G040400.1	RBCL, Ceric.36G040400	not classified & original description: pacid=50569251...	0.05	OrthoFinder output from all 47 species
Ceric.38G006500.1	RBCL, Ceric.38G006500	large subunit of ribulose-1,5-bisphosphat...	0.17	OrthoFinder output from all 47 species
Dcu_g16071	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.06	OrthoFinder output from all 47 species
Dde_g00694	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
Ehy_g08300	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.02	OrthoFinder output from all 47 species
GSVIVT01013856001	RBCL	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.09	OrthoFinder output from all 47 species
GSVIVT01022403001	RBCL	Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban	0.08	OrthoFinder output from all 47 species
Gb_07644	RBCL	Ribulose bisphosphate carboxylase large chain...	0.15	OrthoFinder output from all 47 species
Gb_15502	RBCL	Ribulose bisphosphate carboxylase large chain...	0.15	OrthoFinder output from all 47 species
Gb_18620	RBCL	Ribulose bisphosphate carboxylase large chain...	0.04	OrthoFinder output from all 47 species
Gb_34523	No alias	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.1	OrthoFinder output from all 47 species
Gb_37464	RBCL	Ribulose bisphosphate carboxylase large chain...	0.15	OrthoFinder output from all 47 species
Len_g01809	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.05	OrthoFinder output from all 47 species
Lfl_g07296	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.19	OrthoFinder output from all 47 species
MA_103636g0010	RBCL	Ribulose bisphosphate carboxylase large chain...	0.03	OrthoFinder output from all 47 species
Mp3g01300.1	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Msp_g16802	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.05	OrthoFinder output from all 47 species
Nbi_g02076	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.04	OrthoFinder output from all 47 species
Ore_g01544	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.14	OrthoFinder output from all 47 species
Pir_g10235	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.08	OrthoFinder output from all 47 species
Pnu_g02095	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Ppi_g08990	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257	RBCL	not classified & original description: CDS=1-450	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218	RBCL	not classified & original description: CDS=1-270	0.11	OrthoFinder output from all 47 species
Sam_g02085	No alias	large subunit of ribulose-1,5-bisphosphat...	0.1	OrthoFinder output from all 47 species
Smo137874	RBCL	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.22	OrthoFinder output from all 47 species
Solyc00g500063.1.1	RBCL, Solyc00g500063	large subunit of ribulose-1,5-bisphosphat...	0.35	OrthoFinder output from all 47 species
Solyc07g021200.1.1	RBCL, Solyc07g021200	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.29	OrthoFinder output from all 47 species
Solyc12g062540.3.1	RBCL, Solyc12g062540	Ribulose bisphosphate carboxylase large chain (Fragment)...	0.03	OrthoFinder output from all 47 species
Solyc12g062550.1.1	RBCL, Solyc12g062550	Ribulose bisphosphate carboxylase large chain OS=Solanum...	0.06	OrthoFinder output from all 47 species
Spa_g17352	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.05	OrthoFinder output from all 47 species
Tin_g43831	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.02	OrthoFinder output from all 47 species
Zm00001e002755_P001	RBCL, Zm00001e002755	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.06	OrthoFinder output from all 47 species
Zm00001e031080_P001	RBCL, Zm00001e031080	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.15	OrthoFinder output from all 47 species
Zm00001e042029_P001	RBCL, Zm00001e042029	large subunit of ribulose-1,5-bisphosphat...	0.14	OrthoFinder output from all 47 species
Zm00001e042051_P001	RBCL, Zm00001e042051	large subunit of ribulose-1,5-bisphosphat...	0.16	OrthoFinder output from all 47 species
Zm00001e042083_P001	RBCL, Zm00001e042083	large subunit of ribulose-1,5-bisphosphat...	0.18	OrthoFinder output from all 47 species
Zm00001e042095_P001	RBCL, Zm00001e042095	large subunit of ribulose-1,5-bisphosphat...	0.18	OrthoFinder output from all 47 species
Zm00001e042403_P001	RBCL, Zm00001e042403	large subunit of ribulose-1,5-bisphosphat...	0.18	OrthoFinder output from all 47 species
Zm00001e042465_P001	RBCL, Zm00001e042465	Ribulose bisphosphate carboxylase large chain OS=Zea...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015977	carbon fixation	IEA	Interproscan
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009539	photosystem II reaction center	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016851	magnesium chelatase activity	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	HCCA
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017443	RuBisCO_lsu_fd_N	24	144
IPR000685	RuBisCO_lsu_C	154	250
IPR000685	RuBisCO_lsu_C	280	326
IPR000589	Ribosomal_S15	418	489

External Links

No external refs found!

LOC_Os12g10580.1 (RBCL, LOC_Os12g10580)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation