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  5. LOC_Os12g01190.2

LOC_Os12g01190.2 (LOC_Os12g01190)


Aliases : LOC_Os12g01190

Description : component NOT4 of mRNA deadenylation CCR4-NOT complex


Gene families : OG0003273 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003273_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g01190.2

Target Alias Description ECC score Gene Family Method Actions
AT5G60170 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.1 OrthoFinder output from all 47 species
Adi_g019442 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Adi_g126888 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34034 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Ala_g09045 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.09 OrthoFinder output from all 47 species
Als_g29069 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.07 OrthoFinder output from all 47 species
Aop_g13675 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Aspi01Gene33440.t2 Aspi01Gene33440 component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
Azfi_s0253.g060398 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
Ceric.30G019900.1 Ceric.30G019900 component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Dcu_g07158 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.08 OrthoFinder output from all 47 species
Dde_g04458 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01025102001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.1 OrthoFinder output from all 47 species
Lfl_g34846 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.09 OrthoFinder output from all 47 species
MA_26070g0010 No alias component NOT4 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Msp_g14663 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Ore_g37215 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.03 OrthoFinder output from all 47 species
Pir_g03113 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019919 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.04 OrthoFinder output from all 47 species
Smo76400 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
Solyc04g049840.4.1 Solyc04g049840 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.01 OrthoFinder output from all 47 species
Solyc06g005190.4.1 Solyc06g005190 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Spa_g26857 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex... 0.05 OrthoFinder output from all 47 species
Zm00001e020808_P001 Zm00001e020808 component NOT4 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 117 196
No external refs found!