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  5. LOC_Os10g35560.1

LOC_Os10g35560.1 (SFR6, LOC_Os10g35560)


Aliases : SFR6, LOC_Os10g35560

Description : component MED16 of tail module of MEDIATOR transcription co-activator complex


Gene families : OG0004636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g35560.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT4G04920 SFR6 sensitive to freezing 6 0.05 OrthoFinder output from all 47 species
Adi_g019103 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Aev_g01581 SFR6 component *(MED16) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Ala_g22100 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Aop_g63638 SFR6 component *(MED16) of tail module of MEDIATOR... 0.1 OrthoFinder output from all 47 species
Azfi_s0177.g056143 SFR6 component *(MED16) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Cba_g25254 SFR6 component *(MED16) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Ceric.22G016300.1 SFR6, Ceric.22G016300 component *(MED16) of tail module of MEDIATOR... 0.09 OrthoFinder output from all 47 species
Cre04.g220600 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g31022 SFR6 component *(MED16) of tail module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Dde_g10197 SFR6 component *(MED16) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
GSVIVT01002224001 SFR6 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Gb_16787 SFR6 component MED16 of tail module of MEDIATOR transcription... 0.06 OrthoFinder output from all 47 species
Len_g21218 SFR6 component *(MED16) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
MA_10435759g0010 SFR6 component MED16 of tail module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
MA_176669g0010 SFR6 component MED16 of tail module of MEDIATOR transcription... 0.06 OrthoFinder output from all 47 species
Msp_g24817 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ore_g19699 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Pir_g09806 SFR6 component *(MED16) of tail module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Ppi_g02397 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Sam_g29952 No alias component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Tin_g02895 SFR6 component *(MED16) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Zm00001e004466_P003 SFR6, Zm00001e004466 component MED16 of tail module of MEDIATOR transcription... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!