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Aliases : PTAC3, LOC_Os10g32540
Description : PAP1/TAC3 cofactor of plastid-encoded RNA polymerase
Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G04260 | PTAC3 | plastid transcriptionally active 3 | 0.19 | OrthoFinder output from all 47 species | |
| Adi_g020728 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g04595 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g42612 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g10889 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0371.g067120 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34156 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.39G010500.1 | PTAC3, Ceric.39G010500 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.06 | OrthoFinder output from all 47 species | |
| Cre12.g497350 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07704 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g09087 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g16824 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01026351001 | PTAC3 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.13 | OrthoFinder output from all 47 species | |
| Gb_05601 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g12563 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.07 | OrthoFinder output from all 47 species | |
| MA_7597000g0010 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.07 | OrthoFinder output from all 47 species | |
| Mp2g04680.1 | PTAC3 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.12 | OrthoFinder output from all 47 species | |
| Msp_g16208 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g37614 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g02363 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0054.g014299 | PTAC3 | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g050540.4.1 | PTAC3, Solyc04g050540 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.14 | OrthoFinder output from all 47 species | |
| Zm00001e004642_P001 | PTAC3, Zm00001e004642 | PAP1/TAC3 cofactor of plastid-encoded RNA polymerase | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| CC | GO:0005783 | endoplasmic reticulum | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:2001070 | starch binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003034 | SAP_dom | 545 | 577 |
| No external refs found! |