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  5. LOC_Os10g21110.1

LOC_Os10g21110.1 (LOC_Os10g21110)


Aliases : LOC_Os10g21110

Description : no description available(sp|q680b7|xyn4_arath : 358.0)


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g21110.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00056140 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.02 OrthoFinder output from all 47 species
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.02 OrthoFinder output from all 47 species
AT4G33810 No alias Glycosyl hydrolase superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g25978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10327 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0207.g057923 No alias not classified & original description: CDS=1-1875 0.07 OrthoFinder output from all 47 species
Ceric.30G035800.1 Ceric.30G035800 not classified & original description: pacid=50607993... 0.03 OrthoFinder output from all 47 species
Ceric.30G036100.1 Ceric.30G036100 not classified & original description: pacid=50608372... 0.02 OrthoFinder output from all 47 species
Dcu_g11065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13768 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.04 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os03g10440.1 LOC_Os03g10440 no description available(sp|a0a1p8b8f8|xyn5_arath : 380.0) 0.04 OrthoFinder output from all 47 species
LOC_Os03g10478.1 LOC_Os03g10478 no description available(sp|q84wt5|xyn5l_arath : 394.0) 0.04 OrthoFinder output from all 47 species
LOC_Os10g21100.1 LOC_Os10g21100 no description available(sp|a0a1p8b8f8|xyn5_arath : 358.0) 0.03 OrthoFinder output from all 47 species
Len_g07345 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10433351g0010 No alias no description available(sp|q84wt5|xyn5l_arath : 209.0) 0.04 OrthoFinder output from all 47 species
Sam_g09327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo111304 ATXYN1, RXF12 Cell wall.hemicellulose.xylan.modification and... 0.04 OrthoFinder output from all 47 species
Tin_g27477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000757_P001 Zm00001e000757 no description available(sp|q84wt5|xyn5l_arath : 397.0) 0.03 OrthoFinder output from all 47 species
Zm00001e002760_P001 Zm00001e002760 no description available(sp|q680b7|xyn4_arath : 360.0) 0.1 OrthoFinder output from all 47 species
Zm00001e038773_P006 Zm00001e038773 no description available(sp|q84wt5|xyn5l_arath : 388.0) 0.02 OrthoFinder output from all 47 species
Zm00001e040632_P001 Zm00001e040632 no description available(sp|q680b7|xyn4_arath : 318.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 227 462
No external refs found!