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  5. LOC_Os08g32100.1

LOC_Os08g32100.1 (LOC_Os08g32100)


Aliases : LOC_Os08g32100

Description : pre-mRNA splicing factor (RBM25)


Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g32100.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Aob_g32231 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58521 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.13 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g31973 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g16880.1 No alias pre-mRNA splicing factor (RBM25) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017331 No alias pre-mRNA splicing factor *(RBM25) & original... 0.02 OrthoFinder output from all 47 species
Sam_g16365 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24199 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Smo440812 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 OrthoFinder output from all 47 species
Solyc05g005620.4.1 Solyc05g005620 pre-mRNA splicing factor (RBM25) 0.07 OrthoFinder output from all 47 species
Zm00001e022382_P002 Zm00001e022382 pre-mRNA splicing factor (RBM25) 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 841 905
IPR000504 RRM_dom 218 287
No external refs found!