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  5. LOC_Os08g27010.1

LOC_Os08g27010.1 (APE1, LOC_Os08g27010)


Aliases : APE1, LOC_Os08g27010

Description : photosynthetic acclimation APE acclimation factor


Gene families : OG0005042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g27010.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT5G38660 APE1 acclimation of photosynthesis to environment 0.07 OrthoFinder output from all 47 species
Adi_g042602 APE1 photosynthetic acclimation APE acclimation factor &... 0.02 OrthoFinder output from all 47 species
Aev_g05820 APE1 photosynthetic acclimation APE acclimation factor &... 0.11 OrthoFinder output from all 47 species
Ala_g01434 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Als_g04161 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Aob_g11675 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Aop_g00474 APE1 photosynthetic acclimation APE acclimation factor &... 0.12 OrthoFinder output from all 47 species
Aspi01Gene37157.t1 APE1, Aspi01Gene37157 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Azfi_s0022.g016149 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Cba_g36758 APE1 photosynthetic acclimation APE acclimation factor &... 0.11 OrthoFinder output from all 47 species
Ceric.36G020000.1 APE1, Ceric.36G020000 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.155 APE1 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Cre16.g665250 APE1 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Dcu_g15090 APE1 photosynthetic acclimation APE acclimation factor &... 0.09 OrthoFinder output from all 47 species
Dde_g12570 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Ehy_g07374 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
GSVIVT01036442001 APE1 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Gb_11215 APE1 photosynthetic acclimation APE acclimation factor 0.1 OrthoFinder output from all 47 species
Len_g00377 APE1 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Lfl_g00668 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Mp1g12820.1 APE1 photosynthetic acclimation APE acclimation factor 0.05 OrthoFinder output from all 47 species
Msp_g00353 APE1 photosynthetic acclimation APE acclimation factor &... 0.11 OrthoFinder output from all 47 species
Nbi_g30376 APE1 photosynthetic acclimation APE acclimation factor &... 0.12 OrthoFinder output from all 47 species
Ore_g17711 APE1 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Pir_g12433 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Pir_g59760 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Pnu_g12820 APE1 photosynthetic acclimation APE acclimation factor &... 0.03 OrthoFinder output from all 47 species
Ppi_g32168 APE1 photosynthetic acclimation APE acclimation factor &... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016876 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Sam_g16456 No alias photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Smo117112 APE1 Photosynthesis.photophosphorylation.photosystem... 0.09 OrthoFinder output from all 47 species
Solyc03g034170.4.1 APE1, Solyc03g034170 photosynthetic acclimation APE acclimation factor 0.19 OrthoFinder output from all 47 species
Spa_g11785 APE1 photosynthetic acclimation APE acclimation factor &... 0.15 OrthoFinder output from all 47 species
Tin_g12102 APE1 photosynthetic acclimation APE acclimation factor &... 0.1 OrthoFinder output from all 47 species
Zm00001e004293_P003 APE1, Zm00001e004293 photosynthetic acclimation APE acclimation factor 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR021275 DUF2854 104 254
No external refs found!