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  5. LOC_Os08g06230.1

LOC_Os08g06230.1 (PDE318, LOC_Os08g06230)


Aliases : PDE318, LOC_Os08g06230

Description : Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana (sp|q9c6i8|nog1_arath : 113.0)


Gene families : OG0006383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006383_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g06230.1
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00146270 PDE318,... Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT1G80770 PDE318 P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g021598 PDE318 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15888 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11701 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0112.g045731 PDE318 not classified & original description: CDS=36-1517 0.03 OrthoFinder output from all 47 species
Cre08.g384355 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g46412 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02181 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022468001 PDE318 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Mp7g04840.1 PDE318 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g05831 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo443180 PDE318 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc09g090460.3.1 PDE318, Solyc09g090460 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g13322 PDE318 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040209_P002 PDE318, Zm00001e040209 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004399 histidinol dehydrogenase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004832 valine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006438 valyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR030389 G_FEOB_dom 265 321
IPR010674 NOG1_Rossman_fold_dom 329 386
IPR041623 NOG1_N 101 259
No external refs found!