LOC_Os07g49260.1 (LOC_Os07g49260)

Aliases : LOC_Os07g49260

Description : KA120 nucleocytoplasmic import karyopherin

Gene families : OG0003805 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003805_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g49260.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00173730	evm_27.TU.AmTr_v1...	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
Aev_g01562	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.06	OrthoFinder output from all 47 species
Als_g07762	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.04	OrthoFinder output from all 47 species
Ceric.03G063300.1	Ceric.03G063300	nucleocytoplasmic import karyopherin *(KA120) & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020614.37	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.01	OrthoFinder output from all 47 species
Dac_g01788	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.03	OrthoFinder output from all 47 species
Dde_g05951	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.04	OrthoFinder output from all 47 species
Gb_25707	No alias	KA120 nucleocytoplasmic import karyopherin	0.03	OrthoFinder output from all 47 species
Lfl_g09480	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.02	OrthoFinder output from all 47 species
Smo185753	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.07	OrthoFinder output from all 47 species
Smo268640	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.06	OrthoFinder output from all 47 species
Solyc09g005130.4.1	Solyc09g005130	KA120 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species
Spa_g19371	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.03	OrthoFinder output from all 47 species
Tin_g12947	No alias	nucleocytoplasmic import karyopherin *(KA120) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e011020_P001	Zm00001e011020	KA120 nucleocytoplasmic import karyopherin	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	29	102

External Links

No external refs found!

LOC_Os07g49260.1 (LOC_Os07g49260)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation