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  5. LOC_Os07g45160.1

LOC_Os07g45160.1 (LOC_Os07g45160)


Aliases : LOC_Os07g45160

Description : scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex


Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g45160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00140350 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.08 OrthoFinder output from all 47 species
Adi_g087186 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Ala_g09749 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.04 OrthoFinder output from all 47 species
Aob_g16280 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Cba_g62248 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Ceric.08G063500.1 Ceric.08G063500 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001278.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Dcu_g05843 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
GSVIVT01017853001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Gb_02851 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g04936 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.04 OrthoFinder output from all 47 species
Msp_g14371 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Ppi_g01326 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Ppi_g14323 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.05 OrthoFinder output from all 47 species
Sam_g50982 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Smo438035 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Solyc06g061120.4.1 Solyc06g061120 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 OrthoFinder output from all 47 species
Solyc12g035670.3.1 Solyc12g035670 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 OrthoFinder output from all 47 species
Zm00001e035716_P003 Zm00001e035716 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 568 862
No external refs found!