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  5. LOC_Os07g43060.1

LOC_Os07g43060.1 (SPT42, LOC_Os07g43060)


Aliases : SPT42, LOC_Os07g43060

Description : component SPT4 of SPT4/5 transcription elongation factor complex


Gene families : OG0004229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g43060.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Adi_g074024 SPT42 component *(SPT4) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Als_g02188 SPT42 component *(SPT4) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aob_g38232 No alias component *(SPT4) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Dcu_g42751 SPT42 component *(SPT4) of SPT4/5 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ehy_g22080 No alias component *(SPT4) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
MA_11596g0010 SPT42 component SPT4 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Mp5g12970.1 SPT42 component SPT4 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Mp5g22120.1 No alias component SPT4 of SPT4/5 transcription elongation factor complex 0.02 OrthoFinder output from all 47 species
Ore_g42092 No alias component *(SPT4) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Pp3c6_2640V3.1 SPT42, Pp3c6_2640 SPT4 homolog 2 0.02 OrthoFinder output from all 47 species
Sam_g00113 No alias component *(SPT4) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
Smo80011 SPT42 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Solyc04g008750.3.1 SPT42, Solyc04g008750 component SPT4 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species
Zm00001e010808_P002 SPT42, Zm00001e010808 component SPT4 of SPT4/5 transcription elongation factor complex 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022800 Spt4/RpoE2_Znf 31 98
No external refs found!