LOC_Os07g30640.1 (LOC_Os07g30640)

Aliases : LOC_Os07g30640

Description : component RPL40 of LSU proteome component

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g30640.1
Cluster	HCCA: Cluster_68

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00161810	evm_27.TU.AmTr_v1...	No description available	0.02	OrthoFinder output from all 47 species
AT1G11980	RUB3	ubiquitin-related protein 3	0.02	OrthoFinder output from all 47 species
AT1G53930	No alias	Ubiquitin-like superfamily protein	0.02	OrthoFinder output from all 47 species
Aop_g58963	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08341.t1	UBQ11, Aspi01Gene08341	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene23086.t1	UBQ11, Aspi01Gene23086	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene23132.t1	UBQ4, Aspi01Gene23132	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44628.t1	RUB1, ATRUB1,...	RUB ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g77158	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G077700.1	Ceric.09G077700	not classified & original description: pacid=50586978...	0.03	OrthoFinder output from all 47 species
Gb_00973	UBQ11	ubiquitin-fold protein (UBQ)	0.02	OrthoFinder output from all 47 species
Gb_05873	UBQ11	Polyubiquitin (Fragment) OS=Linum usitatissimum...	0.03	OrthoFinder output from all 47 species
Gb_28672	RUB1, ATRUB1, NEDD8	ubiquitin-fold protein (RUB)	0.03	OrthoFinder output from all 47 species
Gb_35273	UBQ10	ubiquitin-fold protein (UBQ)	0.07	OrthoFinder output from all 47 species
Len_g14650	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Len_g52324	RUB1, ATRUB1, NEDD8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_89348g0010	UBQ14	ubiquitin-fold protein (UBQ)	0.03	OrthoFinder output from all 47 species
Ore_g40058	UBQ11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g11444	No alias	RUB ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11446	No alias	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g005610.4.1	Solyc03g005610	Polyubiquitin (Fragment) OS=Acetabularia peniculus...	0.03	OrthoFinder output from all 47 species
Tin_g17745	UBQ11	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	74
IPR001975	Ribosomal_L40e	84	133

External Links

No external refs found!

LOC_Os07g30640.1 (LOC_Os07g30640)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation