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  5. LOC_Os07g30200.1

LOC_Os07g30200.1 (ATNS1, NS1, OVA8,...)


Aliases : ATNS1, NS1, OVA8, LOC_Os07g30200

Description : asparagine-tRNA ligase


Gene families : OG0001747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g30200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00025770 ATNS1, NS1,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder output from all 47 species
AT4G17300 ATNS1, NS1, OVA8 Class II aminoacyl-tRNA and biotin synthetases... 0.02 OrthoFinder output from all 47 species
Adi_g023016 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Ala_g05395 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Aob_g22110 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Aop_g19184 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Cba_g74983 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.33G014700.1 ATNS1, NS1,... EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Cre03.g193800 SYNC1 ARATH,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder output from all 47 species
Dcu_g51580 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Dde_g00798 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01004706001 ATNS1, NS1, OVA8 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.09 OrthoFinder output from all 47 species
Gb_08700 ATNS1, NS1, OVA8 asparagine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Lfl_g14374 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Mp6g15140.1 ATNS1, NS1, OVA8 asparagine-tRNA ligase 0.1 OrthoFinder output from all 47 species
Nbi_g30040 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g34153 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.05 OrthoFinder output from all 47 species
Pir_g65377 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g59282 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0179.g024756 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Sam_g14397 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Sam_g39305 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Smo92995 SYNC1 ARATH,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Solyc03g019940.4.1 ATNS1, NS1,... asparagine-tRNA ligase 0.08 OrthoFinder output from all 47 species
Tin_g08542 ATNS1, NS1, OVA8 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Zm00001e010372_P004 ATNS1, NS1,... asparagine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Zm00001e034992_P001 ATNS1, NS1,... asparagine-tRNA ligase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004364 Aa-tRNA-synt_II 198 549
IPR004365 NA-bd_OB_tRNA 104 180
No external refs found!