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  5. LOC_Os07g10300.3

LOC_Os07g10300.3 (LOC_Os07g10300)


Aliases : LOC_Os07g10300

Description : no hits & (original description: none)


Gene families : OG0004644 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g10300.3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00199090 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G16870 No alias mitochondrial 28S ribosomal protein S29-related 0.12 OrthoFinder output from all 47 species
Adi_g024356 No alias component *(mS29) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ala_g02185 No alias component *(mS29) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Als_g17645 No alias component *(mS29) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g01335 No alias component *(mS29) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.35G025900.1 Ceric.35G025900 component *(mS29) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dac_g07946 No alias component *(mS29) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g06341 No alias component *(mS29) of small mitoribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Ehy_g16900 No alias component *(mS29) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Gb_06957 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Len_g19506 No alias component *(mS29) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g07075 No alias component *(mS29) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_10436146g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp1g12500.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Nbi_g01092 No alias component *(mS29) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo82814 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc06g082370.4.1 Solyc06g082370 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e011395_P001 Zm00001e011395 no hits & (original description: none) 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019368 Ribosomal_S23/S29_mit 23 240
No external refs found!