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  5. LOC_Os07g07310.1

LOC_Os07g07310.1 (RIF10, PNP, LOC_Os07g07310)


Aliases : RIF10, PNP, LOC_Os07g07310

Description : polynucleotide phosphorylase (PNP)


Gene families : OG0002534 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g07310.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00095690 RIF10, PNP,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
AT3G03710 RIF10, PNP polyribonucleotide nucleotidyltransferase, putative 0.02 OrthoFinder output from all 47 species
Adi_g021889 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Als_g03851 No alias EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Als_g32229 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Aop_g10994 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Aop_g29988 No alias EC_2.7 transferase transferring phosphorus-containing... 0.05 OrthoFinder output from all 47 species
Cba_g07917 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Cba_g17083 No alias EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Cre04.g214501 RIF10, PNP RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Dac_g29233 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Dde_g30979 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
GSVIVT01029958001 RIF10, PNP RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Gb_15670 RIF10, PNP polynucleotide phosphorylase (PNP) 0.02 OrthoFinder output from all 47 species
LOC_Os02g40460.1 LOC_Os02g40460 polynucleotide phosphorylase (PNP) 0.06 OrthoFinder output from all 47 species
Len_g23960 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Len_g45300 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Msp_g13904 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Msp_g14489 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Nbi_g07092 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Nbi_g09693 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
Ore_g20554 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Pir_g13596 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Pnu_g07843 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Ppi_g15192 RIF10, PNP EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016674 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g09102 No alias EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Solyc08g066120.4.1 RIF10, PNP,... polynucleotide phosphorylase (PNP) 0.03 OrthoFinder output from all 47 species
Tin_g20770 No alias EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 234 294
IPR004088 KH_dom_type_1 697 753
IPR003029 S1_domain 769 830
IPR001247 ExoRNase_PH_dom1 99 229
IPR001247 ExoRNase_PH_dom1 456 590
No external refs found!