LOC_Os06g39700.1 (RPOA, LOC_Os06g39700)

Aliases : RPOA, LOC_Os06g39700

Description : RpoA core component plastid-encoded RNA polymerase

Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g39700.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
ATCG00740	RPOA	RNA polymerase subunit alpha	0.23	OrthoFinder output from all 47 species
Aev_g02093	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.4	OrthoFinder output from all 47 species
Als_g16097	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.1	OrthoFinder output from all 47 species
Aob_g19924	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.06	OrthoFinder output from all 47 species
Cba_g60899	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.07	OrthoFinder output from all 47 species
Ceric.05G041900.1	RPOA, Ceric.05G041900	core component *(RpoA) of plastid-encoded RNA polymerase...	0.3	OrthoFinder output from all 47 species
Ceric.05G046000.1	RPOA, Ceric.05G046000	not classified & original description: pacid=50577790...	0.03	OrthoFinder output from all 47 species
Ceric.1Z019700.1	RPOA, Ceric.1Z019700	not classified & original description: pacid=50586392...	0.21	OrthoFinder output from all 47 species
Ceric.38G008600.1	RPOA, Ceric.38G008600	core component *(RpoA) of plastid-encoded RNA polymerase...	0.31	OrthoFinder output from all 47 species
Dcu_g20888	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.12	OrthoFinder output from all 47 species
GSVIVT01024860001	RPOA	DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera	0.05	OrthoFinder output from all 47 species
Gb_17282	RPOA	DNA-directed RNA polymerase subunit alpha OS=Cycas...	0.06	OrthoFinder output from all 47 species
Gb_25929	RPOA	DNA-directed RNA polymerase subunit alpha OS=Cycas...	0.07	OrthoFinder output from all 47 species
Gb_36750	RPOA	RpoA core component plastid-encoded RNA polymerase	0.05	OrthoFinder output from all 47 species
Lfl_g19118	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.33	OrthoFinder output from all 47 species
Mpzg00720.1	RPOA	RpoA core component plastid-encoded RNA polymerase	0.05	OrthoFinder output from all 47 species
Nbi_g19365	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.08	OrthoFinder output from all 47 species
Pir_g12462	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.24	OrthoFinder output from all 47 species
Sam_g01699	No alias	core component *(RpoA) of plastid-encoded RNA polymerase...	0.12	OrthoFinder output from all 47 species
Solyc00g500157.1.1	RPOA, Solyc00g500157	RpoA core component plastid-encoded RNA polymerase	0.31	OrthoFinder output from all 47 species
Solyc01g017440.1.1	RPOA, Solyc01g017440	DNA-directed RNA polymerase subunit alpha OS=Solanum...	0.43	OrthoFinder output from all 47 species
Solyc08g081560.1.1	RPOA, Solyc08g081560	DNA-directed RNA polymerase subunit alpha OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc12g035890.3.1	RPOA, Solyc12g035890	DNA-directed RNA polymerase subunit alpha OS=Solanum...	0.06	OrthoFinder output from all 47 species
Spa_g18101	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.11	OrthoFinder output from all 47 species
Tin_g20913	RPOA	core component *(RpoA) of plastid-encoded RNA polymerase...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001971	Ribosomal_S11	48	112
IPR011262	DNA-dir_RNA_pol_insert	179	267
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3	145	334
IPR011260	RNAP_asu_C	374	434

External Links

No external refs found!

LOC_Os06g39700.1 (RPOA, LOC_Os06g39700)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation