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  5. LOC_Os06g29430.1

LOC_Os06g29430.1 (TADA, ATTADA, LOC_Os06g29430)


Aliases : TADA, ATTADA, LOC_Os06g29430

Description : chloroplast-tRNA adenosine deaminase


Gene families : OG0001810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001810_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g29430.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G68720 TADA, ATTADA tRNA arginine adenosine deaminase 0.06 OrthoFinder output from all 47 species
Aop_g29626 emb2191 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
GSVIVT01012004001 TADA, ATTADA RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Pnu_g12564 emb2191 EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Solyc05g010100.4.1 TADA, ATTADA,... tRNA(adenine(34)) deaminase, chloroplastic... 0.06 OrthoFinder output from all 47 species
Tin_g23497 emb2191 EC_3.5 hydrolase acTing on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0002100 tRNA wobble adenosine to inosine editing IEA Interproscan
MF GO:0008251 tRNA-specific adenosine deaminase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR028883 tRNA_aden_deaminase 1389 1551
No external refs found!