LOC_Os06g12100.1 (LOC_Os06g12100)

Aliases : LOC_Os06g12100

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g12100.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s01293p00010460	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT1G56380	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
Aev_g11948	PTAC15	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g20772	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g28766	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g38044	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02967	No alias	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g11072	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g16486	PTAC15	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g48743	PTAC15	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07033	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Gb_00751	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Gb_12368	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Gb_12989	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Gb_13847	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.04	OrthoFinder output from all 47 species
Gb_39322	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_31885g0010	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Msp_g47549	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc04g011700.2.1	Solyc04g011700	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e010589_P001	Zm00001e010589	transcription factor (mTERF)	0.06	OrthoFinder output from all 47 species
Zm00001e018154_P001	Zm00001e018154	transcription factor (mTERF)	0.06	OrthoFinder output from all 47 species
Zm00001e031638_P001	Zm00001e031638	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	157	358

External Links

No external refs found!

LOC_Os06g12100.1 (LOC_Os06g12100)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation