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  5. LOC_Os06g05180.3

LOC_Os06g05180.3 (LOC_Os06g05180)


Aliases : LOC_Os06g05180

Description : Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica (sp|q5vq78|cob21_orysj : 536.0)


Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g05180.3
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.08 OrthoFinder output from all 47 species
AT1G79990 No alias structural molecules 0.14 OrthoFinder output from all 47 species
AT3G15980 No alias Coatomer, beta' subunit 0.08 OrthoFinder output from all 47 species
Adi_g088099 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Aev_g07650 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Aev_g13025 No alias subunit beta2 of coat protein complex & original... 0.08 OrthoFinder output from all 47 species
Ala_g02602 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Als_g04780 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g23306 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Als_g23307 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g06720 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g12571 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0001.g000608 No alias subunit beta2 of coat protein complex & original... 0.08 OrthoFinder output from all 47 species
Azfi_s0038.g026263 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Cba_g14578 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Cba_g32368 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Cba_g36928 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Cba_g71110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G060200.1 Ceric.30G060200 subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder output from all 47 species
Dac_g05778 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Dcu_g04083 No alias subunit beta2 of coat protein complex & original... 0.15 OrthoFinder output from all 47 species
Dde_g02366 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Ehy_g08641 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01017121001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.1 OrthoFinder output from all 47 species
Gb_26317 No alias subunit beta2 of coat protein complex 0.05 OrthoFinder output from all 47 species
Len_g12266 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Len_g46090 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Lfl_g05710 No alias subunit beta2 of coat protein complex & original... 0.11 OrthoFinder output from all 47 species
MA_10436836g0020 No alias Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.13 OrthoFinder output from all 47 species
Msp_g01672 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Nbi_g07405 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Ore_g10228 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Pir_g14528 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Pp3c14_8280V3.1 Pp3c14_8280 Coatomer, beta\ subunit 0.01 OrthoFinder output from all 47 species
Pp3c2_1810V3.1 Pp3c2_1810 Coatomer, beta\ subunit 0.01 OrthoFinder output from all 47 species
Ppi_g01343 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Sam_g08319 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Solyc03g120270.4.1 Solyc03g120270 subunit beta2 of coat protein complex 0.13 OrthoFinder output from all 47 species
Solyc06g066730.3.1 Solyc06g066730 subunit beta2 of coat protein complex 0.11 OrthoFinder output from all 47 species
Solyc12g043000.3.1 Solyc12g043000 subunit beta2 of coat protein complex 0.18 OrthoFinder output from all 47 species
Spa_g10496 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Spa_g17544 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Tin_g02168 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e014494_P001 Zm00001e014494 subunit beta2 of coat protein complex 0.19 OrthoFinder output from all 47 species
Zm00001e024969_P001 Zm00001e024969 subunit beta2 of coat protein complex 0.18 OrthoFinder output from all 47 species
Zm00001e030001_P002 Zm00001e030001 subunit beta2 of coat protein complex 0.17 OrthoFinder output from all 47 species
Zm00001e036524_P002 Zm00001e036524 subunit beta2 of coat protein complex 0.09 OrthoFinder output from all 47 species
Zm00001e037375_P002 Zm00001e037375 subunit beta2 of coat protein complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 3 180
No external refs found!