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  5. LOC_Os05g51830.1

LOC_Os05g51830.1 (HDT3, HD2C, LOC_Os05g51830)


Aliases : HDT3, HD2C, LOC_Os05g51830

Description : histone deacetylase (HDT/HD2)


Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g51830.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT3G44750 HDA3, ATHD2A, HDT1, HD2A histone deacetylase 3 0.07 OrthoFinder output from all 47 species
Adi_g045241 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Adi_g106676 HDT3, HD2C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05943 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Aop_g12332 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Aop_g15503 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene25677.t1 HDA3, ATHD2A,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0245.g060013 No alias not classified & original description: CDS=211-1146 0.04 OrthoFinder output from all 47 species
Cba_g05176 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Ceric.33G031600.1 HDA3, ATHD2A,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.65 ATFKBP53, FKBP53 Protein modification.protein folding and quality... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000983.33 No alias Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
Dac_g11095 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g20489 HDA3, ATHD2A, HDT1, HD2A peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01031404001 HDA3, ATHD2A, HDT1, HD2A Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
Len_g17092 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
MA_118767g0010 HDA3, ATHD2A, HDT1, HD2A histone deacetylase (HDT/HD2) 0.03 OrthoFinder output from all 47 species
MA_3905g0020 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_601245g0010 No alias histone deacetylase (HDT/HD2) 0.04 OrthoFinder output from all 47 species
Nbi_g12444 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Sam_g14661 No alias HD2-type histone deacetylase *(HD2/HDT) & original... 0.07 OrthoFinder output from all 47 species
Sam_g14662 No alias HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Smo428242 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Solyc09g009030.4.1 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.1 OrthoFinder output from all 47 species
Spa_g40541 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.05 OrthoFinder output from all 47 species
Tin_g14352 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20431 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e027707_P004 HDT3, HD2C,... histone deacetylase (HDT/HD2) 0.09 OrthoFinder output from all 47 species
Zm00001e028513_P001 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.02 OrthoFinder output from all 47 species
Zm00001e032246_P002 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041232 NPL 3 92
No external refs found!