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  5. LOC_Os05g37500.1

LOC_Os05g37500.1 (GCT, LOC_Os05g37500)


Aliases : GCT, LOC_Os05g37500

Description : component MED13 of kinase module of MEDIATOR transcription co-activator complex


Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g37500.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00198p00028070 GCT,... RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
AT1G55325 GCT RNA polymerase II transcription mediators 0.1 OrthoFinder output from all 47 species
Adi_g014199 GCT component *(MED13) of kinase module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ala_g37172 GCT component *(MED13) of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Aob_g28951 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Aop_g09012 GCT component *(MED13) of kinase module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Aspi01Gene47628.t1 GCT, Aspi01Gene47628 component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47629.t1 GCT, Aspi01Gene47629 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g014125 GCT component *(MED13) of kinase module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ceric.39G047500.1 GCT, Ceric.39G047500 component *(MED13) of kinase module of MEDIATOR... 0.11 OrthoFinder output from all 47 species
Cre02.g080300 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01025465001 GCT RNA biosynthesis.RNA polymerase II-dependent... 0.09 OrthoFinder output from all 47 species
Gb_30550 GCT component MED13 of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Len_g28451 GCT component *(MED13) of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Lfl_g29089 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
MA_577306g0010 GCT no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_84527g0010 GCT component MED13 of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Mp1g01940.1 GCT component MED13 of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Msp_g14816 GCT component *(MED13) of kinase module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Nbi_g38836 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Ore_g36609 GCT component *(MED13) of kinase module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Pnu_g07521 GCT component *(MED13) of kinase module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ppi_g03289 GCT component *(MED13) of kinase module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026430 GCT component *(MED13) of kinase module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Sam_g17992 No alias component *(MED13) of kinase module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Sam_g29276 No alias component *(MED13) of kinase module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Smo447924 GCT RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
Solyc04g039950.4.1 GCT, Solyc04g039950 component MED13 of kinase module of MEDIATOR... 0.09 OrthoFinder output from all 47 species
Zm00001e036721_P002 GCT, Zm00001e036721 component MED13 of kinase module of MEDIATOR... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEA Interproscan
BP GO:0006357 regulation of transcription by RNA polymerase II IEA Interproscan
CC GO:0016592 mediator complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR041285 MID_MedPIWI 1246 1481
IPR009401 Med13_C 1632 2031
No external refs found!