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  5. LOC_Os05g24970.1

LOC_Os05g24970.1 (LOC_Os05g24970)


Aliases : LOC_Os05g24970

Description : component Sm-D2 of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0003421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g24970.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00221440 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
AT2G47640 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
AT3G62840 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
Adi_g052390 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Als_g20203 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cba_g54636 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Ceric.02G113700.1 Ceric.02G113700 component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Ceric.04G039600.1 Ceric.04G039600 component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021133.4 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.09 OrthoFinder output from all 47 species
Cre10.g453450 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.15 OrthoFinder output from all 47 species
Dcu_g45622 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
GSVIVT01028015001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Lfl_g33846 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Lfl_g38291 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Mp3g10740.1 No alias component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.09 OrthoFinder output from all 47 species
Msp_g40255 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Pp3c10_17640V3.1 Pp3c10_17640 Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
Pp3c12_17690V3.1 Pp3c12_17690 Small nuclear ribonucleoprotein family protein 0.04 OrthoFinder output from all 47 species
Sam_g08212 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Solyc09g075130.3.1 Solyc09g075130 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Spa_g22292 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Tin_g15303 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Zm00001e007570_P002 Zm00001e007570 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005761 mitochondrial ribosome IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 27 101
No external refs found!