- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : PKDM7D, LOC_Os05g10770
Description : histone demethylase (PKDM7). transcription factor (JUMONJI)
Gene families : OG0001130 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001130_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00009p00253500 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G08620 | PKDM7D | Transcription factor jumonji (jmj) family protein / zinc... | 0.04 | OrthoFinder output from all 47 species | |
| AT1G63490 | No alias | transcription factor jumonji (jmjC) domain-containing protein | 0.06 | OrthoFinder output from all 47 species | |
| AT4G20400 | PKDM7B, JMJ14 | JUMONJI 14 | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g042525 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g055868 | No alias | histone demethylase *(KDM5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g46750 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g08112 | No alias | histone demethylase *(KDM5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g62631 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g17236 | No alias | histone demethylase *(KDM5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g13779 | No alias | histone demethylase *(KDM5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene28386.t1 | Aspi01Gene28386 | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene34964.t2 | PKDM7D, Aspi01Gene34964 | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene38469.t1 | PKDM7D, Aspi01Gene38469 | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene68630.t1 | PKDM7D, Aspi01Gene68630 | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0102.g044616 | No alias | histone demethylase *(KDM5) & original description: CDS=47-4564 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.01G024900.1 | Ceric.01G024900 | histone demethylase *(KDM5) & original description:... | 0.08 | OrthoFinder output from all 47 species | |
| Ceric.09G000100.1 | PKDM7D, Ceric.09G000100 | histone demethylase *(PKDM7) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g07179 | No alias | histone demethylase *(KDM5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g08688 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01019761001 | No alias | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01023517001 | PKDM7D | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.09 | OrthoFinder output from all 47 species | |
| GSVIVT01028351001 | PKDM7D | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_26073 | No alias | histone demethylase (KDM5). transcription factor (JUMONJI) | 0.06 | OrthoFinder output from all 47 species | |
| Gb_27431 | PKDM7D | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g18977 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g04280 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04296 | No alias | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10434186g0010 | PKDM7D | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| MA_10436180g0010 | No alias | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| MA_11526g0010 | No alias | Putative lysine-specific demethylase JMJ16... | 0.03 | OrthoFinder output from all 47 species | |
| MA_91656g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| MA_97089g0010 | PKDM7D | Putative lysine-specific demethylase JMJ16... | 0.04 | OrthoFinder output from all 47 species | |
| Mp6g20340.1 | PKDM7D | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.04 | OrthoFinder output from all 47 species | |
| Mp8g17910.1 | No alias | histone demethylase (KDM5). transcription factor (JUMONJI) | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g13349 | No alias | histone demethylase *(KDM5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g02485 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g38705 | No alias | histone demethylase *(KDM5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g17312 | PKDM7D | histone demethylase *(PKDM7) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g15994 | No alias | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g52140 | No alias | histone demethylase *(KDM5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c21_10100V3.1 | Pp3c21_10100 | JUMONJI 14 | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g11634 | No alias | histone demethylase *(KDM5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g22787 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g008490.3.1 | PKDM7D, Solyc06g008490 | histone demethylase (PKDM7). transcription factor (JUMONJI) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g43423 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g12700 | No alias | histone demethylase *(KDM5) & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051726 | regulation of cell cycle | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| No external refs found! |