LOC_Os05g03740.1 (LOC_Os05g03740)


Aliases : LOC_Os05g03740

Description : transcription factor (Trihelix)


Gene families : OG0001890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001890_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g03740.1

Target Alias Description ECC score Gene Family Method Actions
AT5G01380 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g010971 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018853 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g09969 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10269 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10408 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47784 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02477 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13829.t1 Aspi01Gene13829 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene40808.t1 Aspi01Gene40808 Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009895 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g05886 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g68301 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.35G046600.1 Ceric.35G046600 Trihelix-type transcription factor & original... 0.08 OrthoFinder output from all 47 species
Dde_g00627 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02297 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19503 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19765 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Gb_20046 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
LOC_Os02g47370.1 LOC_Os02g47370 transcription factor (Trihelix) 0.05 OrthoFinder output from all 47 species
Len_g19288 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12494 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28418 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32440 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436704g0010 No alias transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
Msp_g31197 LUG, RON2 component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Nbi_g42102 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23128 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30407 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44485 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45245 No alias Trihelix-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g31822 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06854 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018008 No alias L-lectin protein kinase & original description: CDS=122-1483 0.02 OrthoFinder output from all 47 species
Smo79941 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.04 OrthoFinder output from all 47 species
Solyc09g005560.4.1 Solyc09g005560 transcription factor (Trihelix) 0.07 OrthoFinder output from all 47 species
Spa_g03613 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!