LOC_Os04g42290.1 (LOC_Os04g42290)

Aliases : LOC_Os04g42290

Description : no hits & (original description: none)

Gene families : OG0001057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001057_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g42290.1
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00065p00208780	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT5G44680	No alias	DNA glycosylase superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g025572	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17222	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g27459	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g03652	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g08162	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g14470	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g37787	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.19G064900.1	Ceric.19G064900	not classified & original description: pacid=50575422...	0.03	OrthoFinder output from all 47 species
Ceric.20G003100.1	Ceric.20G003100	not classified & original description: pacid=50566642...	0.03	OrthoFinder output from all 47 species
Dac_g08060	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g08465	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g09353	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dde_g51554	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07806	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01023602001	No alias	No description available	0.09	OrthoFinder output from all 47 species
Len_g07998	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g04057	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_136748g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp3g04160.1	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Msp_g03976	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g08833	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g11422	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g38328	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30259	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g116880.3.1	Solyc03g116880	no hits & (original description: none)	0.1	OrthoFinder output from all 47 species
Solyc04g079990.4.1	Solyc04g079990	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Spa_g08423	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e007660_P001	Zm00001e007660	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
Zm00001e009836_P001	Zm00001e009836	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e019556_P001	Zm00001e019556	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Zm00001e030438_P002	Zm00001e030438	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
Zm00001e041165_P001	Zm00001e041165	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003905	alkylbase DNA N-glycosylase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043733	DNA-3-methylbase glycosylase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005019	Adenine_glyco	157	331

External Links

No external refs found!

LOC_Os04g42290.1 (LOC_Os04g42290)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation