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  5. LOC_Os04g41300.1

LOC_Os04g41300.1 (LOC_Os04g41300)


Aliases : LOC_Os04g41300

Description : RRF translation ribosome recycling factor


Gene families : OG0006739 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006739_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41300.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00134010 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT3G01800 No alias Ribosome recycling factor 0.02 OrthoFinder output from all 47 species
Adi_g097982 No alias translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
Aop_g14062 No alias translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene71471.t1 Aspi01Gene71471 translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
Ceric.03G014600.1 Ceric.03G014600 translation ribosome recycling factor *(RRF) & original... 0.07 OrthoFinder output from all 47 species
Dac_g07844 No alias translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01001818001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_08324 No alias RRF translation ribosome recycling factor 0.02 OrthoFinder output from all 47 species
Len_g02657 No alias translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
MA_10436576g0010 No alias RRF translation ribosome recycling factor 0.03 OrthoFinder output from all 47 species
Nbi_g00582 No alias translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
Pp3c24_18680V3.1 Pp3c24_18680 Ribosome recycling factor 0.01 OrthoFinder output from all 47 species
Solyc11g007740.2.1 Solyc11g007740 RRF translation ribosome recycling factor 0.07 OrthoFinder output from all 47 species
Spa_g21753 No alias translation ribosome recycling factor *(RRF) & original... 0.05 OrthoFinder output from all 47 species
Tin_g19048 No alias translation ribosome recycling factor *(RRF) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e041130_P001 Zm00001e041130 RRF translation ribosome recycling factor 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR023584 Ribosome_recyc_fac_dom 97 257
No external refs found!