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Aliases : TIC40, ATTIC40, PDE120, LOC_Os04g35900
Description : component Tic40 of inner envelope TIC translocation system
Gene families : OG0004334 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004334_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os04g35900.1 | |
| Cluster | HCCA: Cluster_145 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00175860 | TIC40, ATTIC40,... | Protein translocation.chloroplast.inner envelope TIC... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g40292 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g04288 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0109.g045418 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g25182 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.35G014600.1 | TIC40, ATTIC40,... | component *(Tic40) of inner envelope TIC translocation... | 0.03 | OrthoFinder output from all 47 species | |
| Cre12.g508000 | TIC40, ATTIC40, PDE120 | Protein translocation.chloroplast.inner envelope TIC... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g04022 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g07643 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01025999001 | TIC40, ATTIC40, PDE120 | Protein translocation.chloroplast.inner envelope TIC... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g01205 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10433034g0010 | TIC40, ATTIC40, PDE120 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g00830.1 | TIC40, ATTIC40, PDE120 | component Tic40 of inner envelope TIC translocation system | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g12814 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g02850 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g04200 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g25748 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g02041 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0187.g025125 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g17913 | No alias | component *(Tic40) of inner envelope TIC translocation... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g020300.2.1 | TIC40, ATTIC40,... | component Tic40 of inner envelope TIC translocation system | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g08190 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g18919 | TIC40, ATTIC40, PDE120 | component *(Tic40) of inner envelope TIC translocation... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e008048_P001 | TIC40, ATTIC40,... | component Tic40 of inner envelope TIC translocation system | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e040911_P002 | TIC40, ATTIC40,... | component Tic40 of inner envelope TIC translocation system | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | HCCA |
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004399 | histidinol dehydrogenase activity | IEP | HCCA |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006547 | histidine metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016778 | diphosphotransferase activity | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
| CC | GO:0019867 | outer membrane | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0051287 | NAD binding | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR041243 | STI1/HOP_DP | 369 | 420 |
| No external refs found! |