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  5. LOC_Os03g56280.1

LOC_Os03g56280.1 (PMDH1, LOC_Os03g56280)


Aliases : PMDH1, LOC_Os03g56280

Description : peroxisomal NAD-dependent malate dehydrogenase


Gene families : OG0000664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000664_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g56280.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT5G09660 PMDH2 peroxisomal NAD-malate dehydrogenase 2 0.14 OrthoFinder output from all 47 species
Adi_g020369 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Adi_g060426 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.02 OrthoFinder output from all 47 species
Aev_g01101 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.09 OrthoFinder output from all 47 species
Ala_g01385 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.04 OrthoFinder output from all 47 species
Als_g06082 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
Aob_g07797 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.07 OrthoFinder output from all 47 species
Aop_g00482 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.09 OrthoFinder output from all 47 species
Aspi01Gene69164.t1 PMDH1, Aspi01Gene69164 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02437 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.09 OrthoFinder output from all 47 species
Ceric.28G009700.1 PMDH1, Ceric.28G009700 peroxisomal NAD-dependent malate dehydrogenase &... 0.09 OrthoFinder output from all 47 species
Cre10.g423250 PMDH1 Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Dac_g23577 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.05 OrthoFinder output from all 47 species
Dde_g20852 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.08 OrthoFinder output from all 47 species
Ehy_g00867 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.04 OrthoFinder output from all 47 species
GSVIVT01036965001 PMDH1 Lipid metabolism.lipid degradation.fatty acid... 0.15 OrthoFinder output from all 47 species
Gb_00793 PMDH1 peroxisomal NAD-dependent malate dehydrogenase 0.05 OrthoFinder output from all 47 species
Len_g02217 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.03 OrthoFinder output from all 47 species
Lfl_g01023 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
MA_87937g0010 PMDH1 peroxisomal NAD-dependent malate dehydrogenase 0.09 OrthoFinder output from all 47 species
Mp2g08440.1 PMDH1 peroxisomal NAD-dependent malate dehydrogenase 0.09 OrthoFinder output from all 47 species
Mp5g19470.1 mMDH2 mitochondrial NAD-dependent malate dehydrogenase 0.02 OrthoFinder output from all 47 species
Msp_g06714 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.07 OrthoFinder output from all 47 species
Nbi_g02729 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.13 OrthoFinder output from all 47 species
Ore_g20188 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.05 OrthoFinder output from all 47 species
Pir_g12090 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.06 OrthoFinder output from all 47 species
Pnu_g00639 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.04 OrthoFinder output from all 47 species
Pp3c11_3740V3.1 PMDH1, Pp3c11_3740 peroxisomal NAD-malate dehydrogenase 1 0.02 OrthoFinder output from all 47 species
Ppi_g02813 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.12 OrthoFinder output from all 47 species
Ppi_g28680 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.04 OrthoFinder output from all 47 species
Ppi_g61921 MDH malate dehydrogenase component of AAA-ATPase motor... 0.11 OrthoFinder output from all 47 species
Sam_g16454 No alias peroxisomal NAD-dependent malate dehydrogenase &... 0.07 OrthoFinder output from all 47 species
Smo270780 PMDH1 Lipid metabolism.lipid degradation.fatty acid... 0.02 OrthoFinder output from all 47 species
Solyc01g106480.4.1 PMDH1, Solyc01g106480 peroxisomal NAD-dependent malate dehydrogenase 0.07 OrthoFinder output from all 47 species
Spa_g10807 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.1 OrthoFinder output from all 47 species
Tin_g01665 PMDH1 peroxisomal NAD-dependent malate dehydrogenase &... 0.07 OrthoFinder output from all 47 species
Zm00001e005838_P001 PMDH1, Zm00001e005838 peroxisomal NAD-dependent malate dehydrogenase 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022383 Lactate/malate_DH_C 188 351
IPR001236 Lactate/malate_DH_N 44 186
No external refs found!