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  5. LOC_Os03g49520.1

LOC_Os03g49520.1 (LOC_Os03g49520)


Aliases : LOC_Os03g49520

Description : component PININ of RNA quality control Exon Junction complex


Gene families : OG0004599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g49520.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00173p00035440 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
Adi_g117590 No alias component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Als_g09559 No alias component *(PININ) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Aob_g15611 No alias component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g19581 No alias component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.07G024200.1 Ceric.07G024200 component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cre09.g387300 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Dde_g12214 No alias component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Gb_25266 No alias component PININ of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Gb_25267 No alias component PININ of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Gb_25268 No alias component PININ of RNA quality control Exon Junction complex 0.08 OrthoFinder output from all 47 species
Gb_25269 No alias component PININ of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Lfl_g08493 No alias component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Pir_g08174 No alias component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ppi_g15018 No alias component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Spa_g10046 No alias component *(PININ) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Zm00001e005379_P001 Zm00001e005379 component PININ of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Zm00001e012229_P001 Zm00001e012229 component PININ of RNA quality control Exon Junction complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097354 prenylation IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 147 274
No external refs found!