1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g46610.1

LOC_Os03g46610.1 (LOC_Os03g46610)


Aliases : LOC_Os03g46610

Description : DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica (sp|q7y183|rh10_orysj : 777.0)


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g46610.1

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.05 OrthoFinder output from all 47 species
Aop_g68723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037272 No alias not classified & original description: CDS=107-1516 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.20 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Cre16.g683500 AtRH36, SWA3, RH36 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Mp1g19410.1 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Pir_g03371 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g40669 No alias SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Solyc10g005520.3.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.09 OrthoFinder output from all 47 species
Solyc10g007550.3.1 Solyc10g007550 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Tin_g27000 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013281_P004 Zm00001e013281 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004814 arginine-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006420 arginyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0019781 NEDD8 activating enzyme activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045116 protein neddylation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 65 234
IPR001650 Helicase_C 274 377
No external refs found!