1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g35340.1

LOC_Os03g35340.1 (EMB2016, LOC_Os03g35340)


Aliases : EMB2016, LOC_Os03g35340

Description : regulatory component VIR of adenosine N6-methyltransferase complex


Gene families : OG0007626 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007626_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g35340.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00079350 EMB2016,... RNA processing.RNA modification.mRNA... 0.09 OrthoFinder output from all 47 species
AT3G05680 EMB2016 embryo defective 2016 0.12 OrthoFinder output from all 47 species
Adi_g117188 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Aev_g20810 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Ala_g07640 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Als_g16425 EMB2016 regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species
Aob_g21900 EMB2016 regulatory component *(VIR) of adenosine... 0.02 OrthoFinder output from all 47 species
Aop_g09034 EMB2016 regulatory component *(VIR) of adenosine... 0.07 OrthoFinder output from all 47 species
Aspi01Gene70940.t1 EMB2016, Aspi01Gene70940 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70941.t1 EMB2016, Aspi01Gene70941 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70942.t1 EMB2016, Aspi01Gene70942 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g12918 EMB2016 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Ceric.09G038400.1 EMB2016, Ceric.09G038400 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Dac_g17125 EMB2016 regulatory component *(VIR) of adenosine... 0.03 OrthoFinder output from all 47 species
Dcu_g34300 EMB2016 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
Dde_g39555 EMB2016 regulatory component *(VIR) of adenosine... 0.06 OrthoFinder output from all 47 species
GSVIVT01020162001 EMB2016 RNA processing.RNA modification.mRNA... 0.08 OrthoFinder output from all 47 species
Gb_24781 EMB2016 regulatory component VIR of adenosine... 0.02 OrthoFinder output from all 47 species
Lfl_g12938 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
MA_10427076g0010 EMB2016 no description available(sp|f4j8g7|vir_arath : 177.0) 0.02 OrthoFinder output from all 47 species
MA_5836g0010 EMB2016 regulatory component VIR of adenosine... 0.02 OrthoFinder output from all 47 species
Mp1g10290.1 EMB2016 regulatory component VIR of adenosine... 0.04 OrthoFinder output from all 47 species
Msp_g13667 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Nbi_g41774 EMB2016 regulatory component *(VIR) of adenosine... 0.02 OrthoFinder output from all 47 species
Ore_g19695 EMB2016 regulatory component *(VIR) of adenosine... 0.05 OrthoFinder output from all 47 species
Ppi_g08793 EMB2016 regulatory component *(VIR) of adenosine... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010851 EMB2016 regulatory component *(VIR) of adenosine... 0.02 OrthoFinder output from all 47 species
Sam_g18026 No alias regulatory component *(VIR) of adenosine... 0.04 OrthoFinder output from all 47 species
Solyc03g020020.3.1 EMB2016, Solyc03g020020 regulatory component VIR of adenosine... 0.06 OrthoFinder output from all 47 species
Zm00001e012524_P001 EMB2016, Zm00001e012524 regulatory component VIR of adenosine... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!