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  5. LOC_Os03g32630.1

LOC_Os03g32630.1 (ATGCN4, GCN4, LOC_Os03g32630)


Aliases : ATGCN4, GCN4, LOC_Os03g32630

Description : ABC transporter F family member 4 OS=Arabidopsis thaliana (sp|q9m1h3|ab4f_arath : 790.0)


Gene families : OG0004763 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004763_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g32630.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00049960 ATGCN4, GCN4,... ABC transporter F family member 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Aop_g04319 ATGCN4, GCN4 )regulatory protein *(GCN4) of RIN4 activity & original... 0.03 OrthoFinder output from all 47 species
Ceric.21G048500.1 ATGCN4, GCN4,... )regulatory protein *(GCN4) of RIN4 activity & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01034906001 ATGCN4, GCN4 ABC transporter F family member 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_302947g0010 ATGCN4, GCN4 ABC transporter F family member 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Sam_g11948 No alias )regulatory protein *(GCN4) of RIN4 activity & original... 0.03 OrthoFinder output from all 47 species
Solyc07g008610.3.1 ATGCN4, GCN4,... ABC transporter F family member 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 173 331
IPR003439 ABC_transporter-like_ATP-bd 500 635
No external refs found!