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  5. LOC_Os03g22450.1

LOC_Os03g22450.1 (RAD9, ATRAD9, LOC_Os03g22450)


Aliases : RAD9, ATRAD9, LOC_Os03g22450

Description : RAD9 spindle assembly checkpoint protein


Gene families : OG0006386 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22450.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT3G05480 RAD9, ATRAD9 cell cycle checkpoint control protein family 0.05 OrthoFinder output from all 47 species
Adi_g022109 RAD9, ATRAD9 component *(RAD9) of 9-1-1 DNA damage sensor complex &... 0.02 OrthoFinder output from all 47 species
Dac_g22891 RAD9, ATRAD9 component *(RAD9) of 9-1-1 DNA damage sensor complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g01280 RAD9, ATRAD9 component *(RAD9) of 9-1-1 DNA damage sensor complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019200 RAD9, ATRAD9 component *(RAD9) of 9-1-1 DNA damage sensor complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e001636_P003 RAD9, ATRAD9,... RAD9 spindle assembly checkpoint protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000077 DNA damage checkpoint signaling IEA Interproscan
CC GO:0030896 checkpoint clamp complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR007268 Rad9/Ddc1 13 295
No external refs found!