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  5. LOC_Os03g18380.3

LOC_Os03g18380.3 (ATUBA2, UBA 2, LOC_Os03g18380)


Aliases : ATUBA2, UBA 2, LOC_Os03g18380

Description : ubiquitin-activating E1 protein


Gene families : OG0000675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g18380.3

Target Alias Description ECC score Gene Family Method Actions
AT5G06460 ATUBA2, UBA 2 ubiquitin activating enzyme 2 0.05 OrthoFinder output from all 47 species
Aev_g18272 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g62755 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G093700.1 UBA1, MOS5,... E1 ubiquitin-activating enzyme & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.43 UBA1, MOS5, ATUBA1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Gb_06843 UBA1, MOS5, ATUBA1 ubiquitin-activating E1 protein 0.03 OrthoFinder output from all 47 species
MA_10436331g0040 UBA1, MOS5, ATUBA1 component RPL13 of LSU proteome component.... 0.02 OrthoFinder output from all 47 species
Ore_g27854 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023945_P001 UBA1, MOS5,... ubiquitin-activating E1 protein 0.03 OrthoFinder output from all 47 species
Zm00001e039170_P001 ATUBA2, UBA 2,... ubiquitin-activating E1 protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
InterPro domains Description Start Stop
IPR000594 ThiF_NAD_FAD-bd 63 441
IPR019572 UBA_E1_SCCH 646 899
IPR018965 Ub-activating_enz_E1_C 970 1059
IPR000594 ThiF_NAD_FAD-bd 459 958
IPR032418 E1_FCCH 236 306
IPR032420 E1_4HB 308 377
No external refs found!